Render this, for instance, like:
templater::render_template("summarize_run.Rmd",output="lostruct_results/type_snp_size_10000_jobid_324902/run_summary.html",change.rootdir=TRUE)
This run had these parameters:
Here are the number of windows per chromsome, and the computed MDS coordinates, colored by chromosome:
table(regions$chrom)
##
## chr1 chr2 chr3 chr4 chr5 chr6 chr7 chr8
## 497 433 542 541 449 365 476 437
pairs( mds.coords[,mds.cols], pch=20, col=adjustcolor(chrom.cols,0.75) )